PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 299aa    MW: 34347.3 Da    PI: 9.6634
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1681170198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k +++s+v++  +l+lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    l++GW++F  a++L egD++vF+l +  +  l+v 
  XP_016475712.1  81 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCR--LKVY 167
                     89*********************8884..35678****************555555....9**********************865233..4777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016475712.1 168 IVR 170
                     766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-1973172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2274172IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-2479170No hitNo description
PfamPF023621.2E-1481171IPR003340B3 DNA binding domain
SMARTSM010193.2E-1981172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05581172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQFDEVNVGI KKTGPQVMKD MSLGLQGTHK QVFCKKSKKR RSCKKKMAMM QNLYGRFDLA  60
SSAKYRAEEV QSRLSTKYPS FMKPMIRSNV TAGFWLSLPR FFCQLHLPRH DTTVTLVDES  120
QEEYKTKYLA ERNGLSGGWR GFSLAHNLVE GDVLVFQLFR FCRLKVYIVR ANYLAEVDAA  180
LVLLHLDAHQ KQIDPVHQMQ DNRSTKQAGI KRQRFSSQQE EDDYSAEENM LHKHSHPRIT  240
FKDLDLPSKA AGLTYETLSI VDAVKASKIN DPSSWNTRPT ELEQLEIRSF SCGYSIEPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945RRSCKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-62HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475712.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X3
TrEMBLM1CFC61e-171M1CFC6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663121e-170(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-43B3 family protein